SNP Profiles matching GDL 7

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
1._MAR_1	_	_	CC	TT	CC	_	AA	-	AA	CC	_	_	AA	_
2._MAR_20	_	_	CC	TT	CC	_	AA	-	AA	CC	_	_	AA	_
3._RUQ_648	TT	CC	AA	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
4._RUQ_557	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
5._RUQ_683	TT	CC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	AA	CC
6._RUQ_553	TT	CC	CC	TT	CC	GG	AA	CC	AA	-	GG	GG	AA	-
7._RUQ_678	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
8._RUQ_549	TT	AC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	-	CC
9._RUQ_673	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
10._RUQ_1325	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
11._RUQ_843	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG
1._MAR_1	AA	CC	TT	TT	GG	AA	_	TT	_	-	_	_	_	GG
2._MAR_20	AA	CC	TT	TT	GG	AA	_	TT	_	-	_	_	_	GG
3._RUQ_648	AA	CC	TT	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG
4._RUQ_557	AA	CC	TT	TT	GG	AA	CC	TT	TT	GG	GG	TT	AA	GG
5._RUQ_683	AA	CC	-	TT	GG	AA	CC	TT	TT	GG	GG	TT	CC	CG
6._RUQ_553	-	CC	TT	-	GG	AA	TT	TT	TT	GG	-	TT	-	-
7._RUQ_678	AA	CC	TT	TT	GG	CC	TT	TT	TT	GG	GG	TT	CC	GG
8._RUQ_549	AA	CC	-	TT	GG	AA	CC	TT	TT	GG	GG	TT	AC	GG
9._RUQ_673	AA	CC	TT	TT	GG	CC	CC	CT	TT	GG	GG	TT	AC	GG
10._RUQ_1325	AA	CC	TT	TT	CC	AA	CC	CC	TT	GG	GG	TT	AA	GG
11._RUQ_843	AA	CC	-	TT	CC	AA	CC	CC	TT	GG	GG	TT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG
1._MAR_1	CC	CC	_	AA	_	CC	_	_	_	TT	_	_	CC	GG
2._MAR_20	CC	CC	_	AA	_	CC	_	_	_	TT	_	_	CC	GG
3._RUQ_648	CC	CC	-	AA	TT	CC	GG	GG	TT	TT	TT	TT	CC	GG
4._RUQ_557	CC	CC	-	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG
5._RUQ_683	CC	CC	-	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG
6._RUQ_553	CC	CC	-	AA	-	CC	GG	-	TT	TT	TT	-	-	GG
7._RUQ_678	CC	CC	-	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG
8._RUQ_549	CC	CC	AA	AA	TT	CC	GG	AA	TT	TT	CT	TT	CC	GG
9._RUQ_673	CG	CC	-	AG	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG
10._RUQ_1325	CC	CC	AA	GG	TT	CC	GG	AA	TT	TT	CC	TT	CC	GG
11._RUQ_843	CC	CC	-	GG	TT	CC	GG	AA	TT	TT	CC	TT	CC	GG

	43
_Input profile	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._MAR_1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._MAR_20	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_648	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_557	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_683	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_553	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_678	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._RUQ_549	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_673	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_1325	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_843	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GDL_7 RUQ_554

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._MAR_1

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B188 T1

Dapeng Zhang, 2014

2._MAR_20

95.7 %
23 shared markers

View Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B253 T1

Dapeng Zhang, 2014

3._GF_32 RUQ_648

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._MAR_9 RUQ_557

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._GS_13 RUQ_683

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._GDL_3 RUQ_553

93.5 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._LCT_EEN_62_/S-4 RUQ_678

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._DOM_30 RUQ_549

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._DOM_25 RUQ_673

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._SPEC_41_/6-18 RUQ_1325

90.7 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._APA_4 RUQ_843

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484

SNP Profiles matching GDL 7

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Input profile: GDL_7 RUQ_554

1._MAR_1

95.7 % 23 shared markers

2._MAR_20

95.7 % 23 shared markers

3._GF_32 RUQ_648

95.2 % 42 shared markers

4._MAR_9 RUQ_557

95.2 % 42 shared markers

5._GS_13 RUQ_683

95.1 % 41 shared markers

6._GDL_3 RUQ_553

93.5 % 31 shared markers

7._LCT_EEN_62_/S-4 RUQ_678

92.9 % 42 shared markers

8._DOM_30 RUQ_549

92.7 % 41 shared markers

9._DOM_25 RUQ_673

91.7 % 42 shared markers

10._SPEC_41_/6-18 RUQ_1325

90.7 % 43 shared markers

11._APA_4 RUQ_843

90.2 % 41 shared markers

95.7 %
23 shared markers

95.7 %
23 shared markers

95.2 %
42 shared markers

95.2 %
42 shared markers

95.1 %
41 shared markers

93.5 %
31 shared markers

92.9 %
42 shared markers

92.7 %
41 shared markers

91.7 %
42 shared markers

90.7 %
43 shared markers

90.2 %
41 shared markers